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期刊名称:Acta Crystallographica Section C
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Synthesis and crystal structures of halogenated oxathiazolones and an unexpected propanamide
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-15 , DOI: 10.1107/s2053229623002152
The known 1,3,4-oxathiazol-2-ones with crystal structures reported in the Cambridge Structural Database are limited (13 to date) and this article expands the library to 15. In addition, convenient starting materials for the future exploration of 1,3,4-oxathiazol-2-ones are detailed. An unexpected halogenated propanamide has also been identified as a by-product of one reaction, presumably reacting with HCl generated in situ. The space group of 5-[(E)-2-chloroethenyl]-1,3,4-oxathiazol-2-one, C4H2ClNO2S, (1), is P21, with a high Z′ value of 6; the space group of rac-2,3-dibromo-3-chloropropanamide, C3H4Br2ClNO, (2), is P21, with Z′ = 4; and the structure of rac-5-(1,2-dibromo-2-phenylethyl)-1,3,4-oxathiazol-2-one, C10H7Br2NO2S, (3), crystallizes in the space group Pca21, with Z′ = 1. Both of the structures of compounds 2 and 3 are modeled with two-component disorder and each molecular site hosts both of the enantiomers of the racemic pairs (S,S)/(R,R) and (R,S)/(S,R), respectively.
Conversion of 2-methyl-4-styryl­quino­lines into 2,4-distyryl­quino­lines: synthesis, and spectroscopic and structural characterization of five examples
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-02-22 , DOI: 10.1107/s2053229623001432
Competition between chalcogen and halogen bonding assessed through isostructural species
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-11-09 , DOI: 10.1107/s205322962201052x
The amino group of 2-amino-5-(4-halophenyl)-1,3,4-chalcogenadiazole has been replaced with bromo/iodo substituents to obtain a library of four compositionally related compounds. These are 2-iodo-5-(4-iodophenyl)-1,3,4-thiadiazole, C8H4I2N2S, 2-bromo-5-(4-bromophenyl)-1,3,4-selenadiazole, C8H4Br2N2Se, 2-bromo-5-(4-iodophenyl)-1,3,4-selenadiazole, C8H4BrIN2Se, and 2-bromo-5-(4-iodophenyl)-1,3,4-thiadiazole, C8H4BrIN2S. All were isostructural and contained bifurcated Ch…N (Ch is chalcogen) and X…X (X is halogen) interactions forming a zigzag packing motif. The noncovalent Ch…N interaction between the chalcogen-bond donor and the best-acceptor N atom appeared preferentially instead of a possible halogen bond to the same N atom. Hirshfeld surface analysis and energy framework calculations showed that, collectively, a bifurcated chalcogen bond was stronger than halogen bonding and this is more structurally influential in this system.
Complexes of 2,4,6-tri­hydroxy­benzoic acid: effects of intra­molecular hydro­gen bonding on ligand geometry and metal binding modes
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-10-25 , DOI: 10.1107/s2053229622009901
Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-02-23 , DOI: 10.1107/s2053229623001468
A new heteroleptic cuprous polymer constructed by a cyanopyridine ligand exhibiting a supramolecular framework structure and luminescence
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-10-28 , DOI: 10.1107/s2053229622009809
Luminescent cuprous complexes are of great importance among coordination compounds due to their relative abundance, low cost and ability to display excellent luminescence. The title heteroleptic cuprous polymer solvate, catena-poly[[[(9,9-dimethyl-9H-xanthene-4,5-diyl)bis(diphenylphosphane)-κ2P,P′](μ-pyridine-3-carbonitrile-κ2N1:N3)copper(I)] hexafluorophosphate dichloromethane trisolvate], {[Cu(C6H4N2)(C39H32OP2)]PF6·3CH2Cl2}n, conventionally abbreviated as {[Cu(3-PyCN)(Xantphos)]PF6·3CH2Cl2}n, where Xantphos and 3-PyCN represent (9,9-dimethyl-9H-xanthene-4,5-diyl)bis(diphenylphosphane) and pyridine-3-carbonitrile, respectively, has been described. In this polymer solvate, the asymmetric unit consists of three dichloromethane solvent molecules, a hexafluorophosphate anion and a polymeric heteroleptic cuprous complex cation, in which the cuprous centre is in a CuP2N2 tetrahedral coordination and is coordinated by two P atoms from the Xantphos ligand and two N atoms from two 3-PyCN ligands (the pyridyl and cyano N atoms). It is through the connection of the μ2-bridging 3-PyCN ligand that these cuprous centres are linked into a one-dimensional helical chain structure. The chains are further assembled through C—H…π interactions to form a supramolecular metal–organic framework containing solvent-accessible channels. The UV–Vis absorption and photoluminescence properties of this heteroleptic cuprous polymer have been studied on as-synthesized samples. Its luminescence emission should mainly originate from the metal-to-ligand charge transfer excited state.
Tb2–xNdxZn17–yNiy (x = 0.5, y = 4.83): a new intermetallic with a maximum disordered structure and its hydrogen storage properties
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-05-24 , DOI: 10.1107/s2053229623004369
The ternary Tb2–xNdxZn17–yNiy (x = 0.5, y = 4.83) disordered phase belongs to the structural family based on the rhombohedral Th2Zn17 structure type. The structure is maximally disordered since all the sites are occupied by statistical mixtures of atoms. The Tb/Nd mixture of atoms occupies the 6c site (site symmetry 3m). The statistical mixtures Ni/Zn consisting of more Ni atoms are located in the 6c and 9d (symmetry .2/m) sites. In the following 18f (site symmetry .2) and 18h (site symmetry .m) sites are located Zn/Ni statistical mixtures which consist of more Zn atoms. Zn/Ni atoms form three-dimensional networks with hexagonal channels that fill statistical mixtures of Tb/Nd and Ni/Zn. The Tb2–xNdxZn17–yNiy compound belongs to the family of intermetallic phases capable of absorbing hydrogen. In the structure, there are three types of voids, namely, 9e (site symmetry .2/m), 3b (site symmetry m) and 36i (site symmetry 1), in which hydrogen can be inserted, and the maximum total absorption capacity can reach 1.21 wt% H2. Electrochemical hydrogenation shows that the phase absorbs 1.03% of H2, which indicates partial filling of the voids with H atoms.
Synthesis, crystal structure and biological properties of a fluorophore-labelled mixed-ligand copper(II) complex incorporating N-hydroxynaphthalene-1,8-dicarboximide
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-11-28 , DOI: 10.1107/s2053229622011147
The mixed-ligand fluorophore-labelled copper(II) complex aqua[2,4-dioxo-3-azatricyclo[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaen-3-olato-κ2O2,O3](1,10-phenanthroline-κ2N,N′)copper(II) nitrate, [Cu(C12H6NO3)(C12H8N2)(H2O)]NO3·CH3OH or [Cu(L)(phen)(H2O)]NO3·CH3OH (where phen is 1,10-phenanthroline and HL is N-hydroxynaphthalene-1,8-dicarboximide), (1), was synthesized and structurally characterized. The structure of (1) was confirmed by single-crystal X-ray structure determination. The complex crystallized in the triclinic space group P. The geometry around the copper centre is distorted square pyramidal, with the apical position occupied by a water molecule. The complex is highly fluorescent in organic and aqueous solutions. It has good anticancer activity, with an IC50 value of 17 µM, which is almost five times greater than cisplatin (IC50 = 82 µM) under identical experimental conditions.
Synthesis, crystal structure and Hirshfeld analysis of triphenylphosphine–(4-bromophenyl)borane
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-10-28 , DOI: 10.1107/s2053229622010002
The title compound, alternatively called (4-bromophenyl)dihydrido(triphenylphosphanyl)boron, C24H21BBrP, crystallizes in the space group P with one symmetry-independent molecule in the asymmetric unit. The B and P atoms both adopt the expected tetrahedral geometry. A possible intramolecular B—Hδ−…δ+H—C dihydrogen bond exists between an arene group on phosphorus and the borane center. In the solid state, the title molecule is connected to its neighbors by intermolecular C—H…π interactions, with the arene rings on the P atom acting as hydrogen-bond donors and the arene ring of the borane acting as the acceptor. Hirshfeld analysis supports the existence of these interactions, as well as weak Br…Br interactions between neighboring molecules.
X-ray studies of three 3,6-bis(pyridin-2-yl)-1,2,4,5-tetrazine cocrystals: an unexpected molecular conformation stabilized by hydrogen bonds
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-01-18 , DOI: 10.1107/s2053229622012256
The results of the X-ray structure analysis of three novel 3,6-bis(pyridin-2-yl)-1,2,4,5-tetrazine cocrystals are presented. These are 3,6-bis(pyridin-2-yl)-1,2,4,5-tetrazine–2,4,6-tribromophenol (1/2), C12H8N6·2C6H3Br3O, 3,6-bis(pyridin-2-yl)-1,2,4,5-tetrazine–isonicotinic acid N-oxide (1/2), C12H8N6·2C6H5NO3, and 3,6-bis(pyridin-2-yl)-1,2,4,5-tetrazine–4-nitrobenzenesulfonamide (1/1), C12H8N6·C6H6N2O4S. Special attention is paid to a conformational analysis of the title tetrazine molecule in known crystal structures. Quantum chemistry methods are used to compare the energetic parameters of the investigated conformations. A structural analysis of the hydrogen and halogen bonds with acceptor aromatic tetrazine and pyrazine rings is conducted in order to elucidate factors responsible for conformational stability.
Bending properties in the 4-halobenzonitrile crystals and C–halogen…N[triple-bond]C halogen bonds
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-11-09 , DOI: 10.1107/s205322962201018x
The single crystal of 4-iodobenzonitrile (C7H4IN) is brittle, whereas those of 4-bromobenzonitrile (C7H4BrN) and one of the two forms of 4-chlorobenzonitrile (C7H4ClN) are compliant in nature. The chloro crystal exhibits elastic bending, but in spite of having stronger halogen bonds, the bromo crystal exhibits plastic bending. Crystal structures have been analyzed to understand the different bending properties of these three crystals. In all three cases, the molecules form C—X…N[triple-bond]C (X = halogen) halogen-bonded chains in their respective crystal structures. Statistical analyses and DFT calculations on the C—X…N[triple-bond]C halogen bonds reveal that the optimum geometry of all three halogen bonds is linear and the C—I…N[triple-bond]C bond is strongest among the three. However, when the geometry deviates from linearity, the energy loss is very high in the case of the C—I…N[triple-bond]C bond compared to the other two systems. This explains why 4-iodobenzonitrile is brittle, whereas the other two are flexible. The interactions in 4-bromobenzonitrile are more isotropic than those in 4-chlorobenzonitrile. The iodo and chloro compounds crystallize in centrosymmetric space groups, whereas the crystal of the bromo compound lacks inversion symmetry. In spite of this difference in their space groups, the chloro and bromo crystals have very similar crystal packing. In the case of the bromo crystal, the halogen-bonded chains are parallel to the bending axis (long axis) of the crystal. However, these chains are significantly tilted in the case of the chloro crystal. The isotropic/anisotropic interactions, presence/absence of an inversion centre and the different alignment of the halogen-bonded chains with respect to the bending axis could explain the different bending properties of the chloro and bromo crystals.
Structural, spectroscopic, luminescence sensing and TD–DFT theoretical studies of a CuP2N-type complex
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-04-20 , DOI: 10.1107/s2053229623003340
Luminescent cuprous complexes are an important class of coordination compounds due to their relative abundance, low cost and ability to display excellent luminescence. The title heteroleptic cuprous complex, [2,2′-bis(diphenylphosphanyl)-1,1′-binaphthyl-κ2P,P′](2-phenylpyridine-κN)copper(I) hexafluoridophosphate, rac-[Cu(C44H32P2)(C11H9N)]PF6, conventionally abbreviated rac-[Cu(BINAP)(2-PhPy)]PF6 (I), where BINAP and 2-PhPy represent 2,2′-bis(diphenylphosphanyl)-1,1′-binaphthyl and 2-phenylpyridine, respectively, is described. In this complex, the asymmetric unit consists of a hexafluoridophosphate anion and a heteroleptic cuprous complex cation, in which the cuprous centre in a CuP2N coordination triangle is coordinated by two P atoms from the BINAP ligand and by one N atom from the 2-PhPy ligand. Time-dependent density functional theory (TD–DFT) calculations show that the UV–Vis absorption of I should be attributed to ligand-to-ligand charge transfer (LLCT) characteristic excited states. It was also found that the paper-based film of this complex exhibited obvious luminescence light-up sensing for pyridine.
Dibromomethyl- and bromomethyl- or bromo-substituted benzenes and naphthalenes: C—Br…Br interactions
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-02-15 , DOI: 10.1107/s2053229623000906
The structures of six benzene and three naphthalene derivatives involving bromo, bromomethyl and dibromomethyl substituents, namely, 1,3-dibromo-5-(dibromomethyl)benzene, C7H4Br4, 1,4-dibromo-2,5-bis(bromomethyl)benzene, C8H4Br6, 1,4-dibromo-2-(dibromomethyl)benzene, C7H4Br4, 1,2-bis(dibromomethyl)benzene, C8H6Br4, 1-(bromomethyl)-2-(dibromomethyl)benzene, C8H7Br3, 2-(bromomethyl)-3-(dibromomethyl)naphthalene, C12H9Br3, 2,3-bis(dibromomethyl)naphthalene, C12H8Br4, 1-(bromomethyl)-2-(dibromomethyl)naphthalene, C12H9Br3, and 1,3-bis(dibromomethyl)benzene, C8H6Br4, are presented. The packing patterns of these compounds are dominated by Br…Br contacts and C—H…Br hydrogen bonds. The Br…Br contacts, shorter than twice the van der Waals radius of bromine (3.7 Å), seem to play a crucial role in the crystal packing of all these compounds. The occurrence of Type I and Type II interactions is also discussed briefly, considering the effective atomic radius of bromine, as is their impact on the packing of molecules in the individual structures.
Effects of electron-donating ability of binding sites on coordination number: the interactions of a cyclic Schiff base with copper ions
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-21 , DOI: 10.1107/s2053229623002280
The stepwise addition of Cu2+ ions to the nonplanar cyclic Schiff base 5,9,14,18-tetramethyl-1,4,10,13-tetraazacyclooctadeca-5,8,14,17-tetraene-7,16-dione (H4daaden, C18H28N4O2), yields a one-end-open dinuclear copper chelate. The pyridine adduct of the dinuclear copper chelate, namely, [μ-6,11-dimethyl-7,10-diazahexadeca-5,11-diene-2,4,13,15-tetraolato(4−)](pyridine)dicopper(II), [Cu2(C16H20N2O4)(C5H5N)], was characterized by single-crystal X-ray crystallography. The two CuII atoms of the copper chelate display different coordination modes, i.e. inner-N2O2 and outer-O2O2. The Cu atom which is bonded in the outer-O2O2 mode is axially bonded to a pyridine molecule, which suggests that the electron-donating ability of the O2O2 site to the Cu atom is poor. As a result, the O2O2-bonded Cu atom has a coordination number of five, showing square-bipyramidal geometry around the Cu atom. The N2O2-coordinated site provides sufficient electron density to the other Cu atom to be stabilized with a coordination number of four, showing square-planar geometry around the Cu atom. The electron-donating ability of the ligand coordination sites plays a key role in determining the coordination number of the Cu atoms of the dicopper chelate.
Crystal structure of potassium chloride monohydrate: water intercalation into the B1 structure of KCl under high pressure. Corrigendum
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-01-30 , DOI: 10.1107/s2053229623000669
Quantitative insights into noncovalent interactions involving halogen and tetrel bonds in 2,4,6-trimethylpyrylium tetrafluoroborate
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-10-28 , DOI: 10.1107/s2053229622009469
The crystal and molecular structure of an organic salt, in which a 2,4,6-trimethylpyrylium cation forms a salt with a tetrafluoroborate anion, namely, 2,4,6-trimethylpyrylium tetrafluoroborate, C8H11O+·BF4−, has been experimentally realized. The compound crystallizes in the orthorhombic centrosymmetric space group Pnma. The crystal packing is stabilized via a subtle interplay of [F3—B—F]−…O+—C fluorine/oxygen-centred halogen/chalcogen bonds and Cδ+…Fδ− tetrel-bonded contacts. Although the O centre has a formal charge of +1, the estimation of the partial negative charges on O is in accordance with electronegativity considerations. Hirshfeld surface analysis, which also includes an analysis of the three-dimensional deformation density, along with molecular electrostatic potential (MESP) calculations, provides quantitative insights into the nature of the intermolecular interactions. The topological analysis of the electron-density distribution has been performed using AIMAll and TOPOND, and unequivocally establishes the bonding character associated with the different noncovalent interactions. In addition, NBO analysis and polarizability calculations using PolaBer render deeper physical insights into the electronic characteristics of these noncovalent interactions.
Crystal structure and DFT calculations of Cp2NbH(SiIMe2)(SiFMe2): an asymmetric bis(silyl) niobocene hydride complex
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-22 , DOI: 10.1107/s2053229623002395
An asymmetric bis(silyl) niobocene hydride complex, namely, bis(η5-cyclopentadienyl)(fluorodimethylsilyl)hydrido(iododimethylsilyl)niobium, [Nb(C5H5)2(C2H6FSi)(C2H6ISi)H] or Cp2NbH(SiIMe2)(SiFMe2), has been studied to determine the effect of the silyl ligand on the position of the hydride attached to the Nb atom. It has been shown that when a Group 17 atom is substituted onto one of the silyl ligands, there is a greater interaction between the hydride and this ligand, as demonstrated by a shorter Si…H distance. In the present work, we have investigated the effect when the silyl ligands are substituted by different Group 17 atoms. We present here the structure and DFT calculations of Cp2NbH(SiIMe2)(SiFMe2), showing that the position of the hydride is located between the two silyl ligands. The results from our investigation show that the hydride is closer to the silyl ligand that is substituted by fluorine.
Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-15 , DOI: 10.1107/s2053229623002036
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